Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015926060.1_cds_XP_016474147.1_66202
CDS Infomation

[gene=LOC107795952] [db_xref=GeneID:107795952] [protein=ATP-dependent DNA helicase DDM1-like] [protein_id=XP_016474147.1] [location=join(4872..4928,5758..6018,6110..6190,6558..6904,7060..7249,7387..7562,8133..8202,8341..8530,8948..9043,9126..9220,9306..9425,10114..10233,10532..10630,10710..10817,11159..11398)] [gbkey=CDS]
Sequence

ATGGTGGCCGACGACAAGACAGCTTCGGACTCTCCTGTTTCCGTTCTGGAAGATGAGGAT
ACCTGCAAAGAGGAGCCCGCTGTTAAATTGGAGGAAGTAGTTTATGATGCAGAAAATGAG
GATGTCACTCATATACCTGAATCCATGGAGGAAGAAATTTTGAGGAAAGCATGTGCAAAG
GAGGAAGAGGTACAATTAAATGACCTCAACCAGGCGCCCAGTTTGAATGAAACTCAATTT
ACCAAGTTGGATGAGCTTCTTACCCAGACACAACTTTATTCAGAGTTCCTGCTGGAGAAT
ATGGATAACATCAAAATGATAGAAGGTGAAGAGAAAAGTGTCAATGAAAACAAACGAGGC
CGTGGCTTGAAACGGAAGGCGACAACAGGCTACAACAATAGGAAAGCCAAGAGAGCTGTT
GCTGCCATGCTTACAAGATCTAAAGAAGATGTTTCAAATGAAGATTCAACCCTCACGGAG
GAAGAGAGAGTCGAAAGAGAGCAGGCCGAACTTGTGCCCTTGTTGACTGGTGGGAAATTG
AAATCTTATCAACTGAAAGGTGTCAAGTGGTTGATCTCATTATGGCAAAATGGATTGAAT
GGTATCCTAGCAGATCAAATGGGACTTGGAAAGACAATTCAAACGATAGCTTTTCTTGCT
CATTTGAAGGGGAATGGTTTGGATGGCCCTTATTTGGTCATTGCTCCTTTGTCTACGCTT
TCAAATTGGTTGAATGAGATAGAGAGGTTTGTGCCCTCAATCAATGCAATCATCTACCAC
GGTGACAAGAAACAGAGGGATGAGATAAGGATGAAGCACATGCCGAGGACCATAGGTCCC
AAATTTCCCATTGTAATTACTTCTTATGAAGTTGCATTAAGTGATGCAAGGAAGTGCTTG
AGGCACTACAGTTGGAAATATCTTGTGGTGGATGAGGGGCATAGGTTAAAGAACTCAAAA
TGCAAATTGTTCAAAGAATTGAAGCTGTTGCCCATTGAAAACAAGCTCCTTTTAACTGGA
ACACCTCTGCATAATAACTTAGCTGAGCTGTGGTCCTTGTTGAACTTCATTTTACCGGAC
ATATTCTCTTCCCACGATGAATTTGAGTCATGGTTTGATCTGTCGGGGAAGTGCACCATT
GAATCAGAAAAGGAAGAAATGGAAGAAAAGAGGAGAGCACAAGTTGTGGCCAAACTCCAT
GCAATATTACGTCCTTTTCTTCTACGGAGGATGAAAGTGGATGTTGAGCAAATGCTTCCT
CGTAAGAAGGAGATAATATTGTATGCTACCATGACTGAATACCAGAAAAAGTTCCAGGAA
CACCTAATTAATAGGACACTGGAGGGCTATTTGATTGAGAATGTGTCCACTGGGCATGGT
TTTAAAGGAAAGCTTAATAATTTGATGGTTCAACTTCGCAAGAATTGCAACCATCCTGAT
CTCTTGGAGTCCTTCTTCAACGGTTCTCCTCTTTATCCACCTGTGCAACAAATAGTTGAC
CAATGTGGCAAGTTTATTTTGCTGGACAGACTGTTAACAAAACTGTTTGCTCGCAAGCAC
AAGGTTCTGATATTCTCTCAGTGGACTAGAGTACTGGACATAATGCACTATTATTTTAGT
GAAAAAGGATTTGATGTTTGTAGGATTGATGGCAGTGTGAAATTGGACGAAAGAAAAAGA
CAGATCAAGGAGTTCAATGATGTTAGCAGCAAGTACAGGATATTTCTTCTTAGTACTAGA
GCTGGTGGCCTTGGTATCAATCTGACTGCTGCCGATACCTGTATTTTATATGATAGTGAT
TGGAATCCTCAAATGGATCTACAGGCAATGGATCGGTGCCATAGAATTGGTCAGACCAAA
CCTGTTCATGTTTACAGGTTTTCCACAGCTTTGTCTGTGGAGGGTCGAATCCTCAAAAGA
GCTTTTAGCAAGTTGAAGCTTGAGCAGGTGGTAATCGGGAGAGGACAATTTAAGCAAGAA
AGAAGCAAACCTTCCATGGATGTTATGGAGGAGGAGGACTTGTTGGCTCTCATGAGAGAT
CAAGATAGTGAGGAGGACAAGTTGGTGCAGACAGATGTTACAGATGAAGATCTGGAGAGG
ATTTTAGACCGTAGTGATCTAGTTGTTGGTCCTTCAAGTGAGGATGGGAACACTGAATCA
TGTGTTAATGTGCTTCCTCTCAAAGGACCTGGTTGGGAAGTAGTTATTCCAACTGCAACT
GGAGGCGTGCTTTCCACCCTCAACAGCTGA

Peptide Sequence

PEP ID

XP_016474147.1
PEP Infomation

PREDICTED: ATP-dependent DNA helicase DDM1-like [Nicotiana tabacum]
Sequence

MVADDKTASDSPVSVLEDEDTCKEEPAVKLEEVVYDAENEDVTHIPESMEEEILRKACAK
EEEVQLNDLNQAPSLNETQFTKLDELLTQTQLYSEFLLENMDNIKMIEGEEKSVNENKRG
RGLKRKATTGYNNRKAKRAVAAMLTRSKEDVSNEDSTLTEEERVEREQAELVPLLTGGKL
KSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLDGPYLVIAPLSTL
SNWLNEIERFVPSINAIIYHGDKKQRDEIRMKHMPRTIGPKFPIVITSYEVALSDARKCL
RHYSWKYLVVDEGHRLKNSKCKLFKELKLLPIENKLLLTGTPLHNNLAELWSLLNFILPD
IFSSHDEFESWFDLSGKCTIESEKEEMEEKRRAQVVAKLHAILRPFLLRRMKVDVEQMLP
RKKEIILYATMTEYQKKFQEHLINRTLEGYLIENVSTGHGFKGKLNNLMVQLRKNCNHPD
LLESFFNGSPLYPPVQQIVDQCGKFILLDRLLTKLFARKHKVLIFSQWTRVLDIMHYYFS
EKGFDVCRIDGSVKLDERKRQIKEFNDVSSKYRIFLLSTRAGGLGINLTAADTCILYDSD
WNPQMDLQAMDRCHRIGQTKPVHVYRFSTALSVEGRILKRAFSKLKLEQVVIGRGQFKQE
RSKPSMDVMEEEDLLALMRDQDSEEDKLVQTDVTDEDLERILDRSDLVVGPSSEDGNTES
CVNVLPLKGPGWEVVIPTATGGVLSTLNS

Transcript Sequence

Gene sequence data has not been registered.